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There are at least one dozen devices spread across the United States that connect to our production database, and rely on the current database name. Changing all of these touch points in a single go would be stressful and very risky (even after practice, and lots of planning, we could still miss or break a few devices). Updating the devices one at a time to utilize the new database name is therefore much more favorable. Doing so will allow us to cooperate with the device owners to come up with a time that will not negatively impact their work. Dylan Wood. This script queries the database to ascertain that it is in the right state (WAL streaming), and that the replication position reported by the slave is in line with that expected by the master. When working on a new project or feature, one of our team members will usually create a Google Doc, presentation or simple email that explains the design decisions made. However, because there are a variety of venues for sharing this information (Gmail, Google Drive, Gitter, to name a few), it can be difficult to find it again later. If this blog idea catches on with the rest of the team, this could become the centralized place to document design decisions. Because replication is so important, I have taken a belt and suspenders approach to monitoring the replication lag. This means that Monit is checking the replication status on both the master and the slave servers. The approach uses Monit’s check program functionality to run a simple python script. If the script exits with an error (non-zero) status, then Monit will send an alert to our M/Monit server. M/Monit will then send emails and slack notifications to us. Just to be consistent with our latest server naming convention, the production database should be called proddbcoin . Since we use static IP assignments in our DNS, this should be easy: We can direct all legacy and current hostnames to the same IP, allowing us to slowly migrate devices to the new hostname. In fact, most devices uses a public IP address to connect to our database, since they are not within our private network. OS: Windows 10 Evaluation Copy Browser: Google Chrome 43.0.2357.130 (Tried IE Edge and Firefox with no luck) Modifying the application layer to send requests to the old database server was trivial, since there was a dedicated endpoint just for the low-performig export tool. Getting the old database to refresh from a backup of the new database was a little trickier. I updated the above test so that rand_table has 100 million rows of 7 character numeric strings, and series_table has 9,999,999 rows of 7 character numeric strings, then re-ran the test. This time, the LATERAL JOIN finished in about 44 seconds and the regular JOIN finished in about 20 minutes and 45 seconds (–> 1,245 seconds). This means that the LATERAL JOIN completed the query 28 times faster than the regular JOIN! Database name. This script queries the database to ascertain that it is in the right state (recovery). It also queries the current xlog position from the master , and compares it to the last reply location of the slave. I’ve been looking for a good way to use this feature in our internal code and I finally found one. In our specific instance, using a LATERAL JOIN sped up a query by an order of magnitude! However, our example was relatively complex and specific to us, so here is a generic (very contrived) example. How to [partially] retreat from a database upgrade. /etc/monit/conf.d/pg-slave-replication-check. We recently upgraded our worn-out PostgreSQL 8.4 database running on a Cents 5.5 VM to a shiny new PostgreSQL 9.4 database on top of Ubuntu 14.04. During a three week testing period, we encountered and fixed a coulple of upgrade-induced bugs in our staging environment. At the end of three weeks of testing, we felt confident that the upgrade would go smoothly in production… and it did (mostly). Operating System. Great. Problem solved. …Except that now we have the exact same problem with columns of type numeric(precision, scale) . I have a column of type numeric(2,0) and I really need it to be numeric(4,0) . I’m running into all of the same problems as the varchar issue above. These tips will help yield a healthy app and good time intgrity. It’s a bland topic–thanks for reading! The LATERAL JOIN returns results in about 2 seconds, while the regular JOIN takes about 10 seconds. First, I set up a cron job to run a pg_dump on our hot standby database server every night, and store the dump on our network storage. I have always used the custom format ( -Fc ) for pg_dumps, as they allow a lot of flexibility when performing the restore. This was not an option in this case because I received the following error when trying to restore on the PG 8.4 server: pg_restore: [archiver] unsupported version (1.12) in file header . Those are tough bullets to gamble over. You may have not know how your app or ecosystem will change in time. In a distributed server model, where server activity also needs to be tracked against other servers, UTC normalization may lead to bad consequences! Don’t normalize to UTC if you have rich TZ data to begin with and there is possibility that you will want to maintain client locale time in any part of your app! Allow VMware plugins to run. Google has promised to completely remove NPAPI plugin support from Chrome with version 45. Given the approximate 5-week release schedule that Google has been on, this means that you will only be able to use the most recent version of Chrome with the VMware Client Integration Plugin for another couple of months. Launching a Console in VMware Web Client on Windows 10, Chrome 42+ Results: We already discussed these above. Let’s dive a bit deeper. My initial attempts to circumvent this included running the pg_dump of the new database remotely from the old database server unsuccessfully, and attempting to upgrade only postgres-contrib on the old database server. Neither of these solutions worked out, so I decided to use the plain pg_dump format ( -Fp ). This outputs plain SQL statements to rebuild the schema and data. There are still a few errors during the restore, because the CREATE EXTENSION functionality does not exist in PG 8.4, but I can simply rebuild the necessary extensions manually after the rebuild. time is transferred in varying formats. The day after the upgrade, users started to submit tickets complaining that our data export tool was running very slowly in some cases, and just hanging in other cases. 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CentOS has served us well for many years, but we have found that Ubuntu’s more up-to-date repositories allow us to stay with the herd as new features are released in packages we depend on (e.g. PostgreSQL, PHP5, Node.js, etc…) Hostname. Verify plugins. Next, inspect the atttypmod of the different columns: Use a standard. 8601 is my personal preference. Using a standard is generally the safest, as most languages have a toolset that can parse and manipulate dates/times from a standardized string. It is ideal to do date/time I/O in the same string format on every transfer to make your interfaces predictable! Hope that helps! Log in to the VMware Web Client Locate a VM whos console you want to open Click the Settings tab Near the top of the center pane, you should see a black square with the text Launch Console beneath it. If you see a link to Download plugin instead, something is wrong. Try repeating the steps above. Managing this complication is generally unnecessary. In order to convey a clear, accurate, and complete timestamp, one of which that you can interchange safely across services, serialize your apps’ and services’ timestamps in a complete string during I/O, and parse via language natives or time helper libraries as required. Drew Landis. bad : ‘10/25/2010’ bad : ‘10/25/2010 08:23:22’ good : ‘10/25/2010 08:23:22-07’ good : ‘10/25/2010 08:23:22.2324-07’ (note timezone offset always included) It can be OK for servers to send outbound timestamps normalized to UTC time if: Dylan Wood. Paste chrome://plugins/ into the address bar and press return. Check the box next to ‘Always allow to run’ below both VMware plugins. “ Why am I doing this? “ I try to ask myself this question at least once per hour while I am working to be sure that I am doing something that will contribute to our team’s goals. Consequently, it makes sense to ask (and answer) this question now. There are a few justifications that come to mind. With this in mind, I am going to keep my vSphere desktop application installed. Hopefully, VMware has already begun work on a truly cross platform Web Client that supports launching a console. Notice, there is a pattern here: atttypmod = precision * 65,536 + scale + 4. Another one of the poor design decisions from back in 2010 was to use a non-standard port for PG. I believe that this was a security through obscurity decision. Not only does the obscurity cause issues with our own configuration, it pprovides no additional security against anyone who is able to port-scan on our network. Any security benefit that it might have given us is void as soon as I publish this article. Discussion about NPAPI plugin support. In the slow (LEFT JOIN) query, the subquery is forced to return all data, and then JOIN on that entire result set. It takes a long time to grab and count the entire result set of the subquery, which considerably increases the overall query time. 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You need to drop all dependent views and rules (e.g. Primary Key, etc), make the column data type change, then recreate all dependent views and rules. This sucks. Standardizing PostgresSQL Instances. Changing the port is subject to the same pitfalls mentioned above, so we need a way to support both the legacy port and the new port simultaneously while we carefully update all devices. This can be accomplished using port forwarding within the database server. Dylan Wood. /etc/monit/conf.d/pg-master-replication-check. Look at your own applications. How have you shared times between services? Have you echoed time values directly out of your database? Have your API’s used programming-language specific formatting functions to make time “look” standard to your liking? Open the console for a VM. store all database times as timestamp with timezone (or equivalent) This post has turned into a bit of a long story. 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Aside from loosing much less data in the event of a failover, there are other benefits to having a nearly up-to-date copy of production lying around at all times: Clean Up: Earlier, we examined computing unix time in the browser, using javascript. Postgres. The above is an easy way to get a time. Let us use this in our app, so long as that time data doesn’t leave this client, or this machine doesn’t change timezones. Can you assert that your user’s don’t travel? Can you assert that your time or time calculations won’t be sent somewhere, beyond the client? If you cannot, sending time in a basic integer format drops critical data. Specifically, you lose timezone relativity and, in rare cases, a known base-time reference value. For instance, does that integer reflect the # of seconds from unix-time-start in UTC time, or the # of seconds from unix-time-start, offset for your region? It’s easy to drop critical time data. It’s also very easy to maintain good timestamp data integrity. When possible, application date and time oversights. SQL Lateral Joins. COINS uses a centralized PostgreSQL database. We have been so busy developing new features that we have not upgraded the database used by the COINS production application since 2010! New feature requirements and a need for increased disk space on our production server are finally motivating us to upgrade to PostgreSQL 9.4. While we are at it, we will upgrade the underlying virtual host to Ubuntu Server 14.04, with enough RAM to fit our rapidly growing datbase in memory. Finally, it makes sense to lay some ground work to clean up our inconsistent use of database names and ports. Apps I have worked in have done all sorts of variants in php: Luckily, the folks over at sniptools.com solved this exact problem in this post. I won’t go into the details (you should look at the post directly), but suffice it to say, I have used their solution multiple times on a production database and it has worked amazingly well. CPU Cores. Environment. Christopher Dieringer. Let’s say we want to update column numeric_four_zero to have type numeric(9,0) . A couple of tests: On the slave server. The database is slated to be replaced on Wednesday, June 17th. I will be practicing the deployment using Ansible in our staging environment until then. On the master server: distributed application environments (e.g. languages, operating systems, clients) distributed application hardware client time zones. While using PostgreSQL, you may find yourself in a situation where you have a column whose data type is now too small and the length needs to be increased. Updating a column type in PostgreSQL can, at times, be nothing short of very painful. Here is the cron task that dumps the data. This is placed in its own file in /etc/cron.d. Monitoring PostgreSQL Replication Lag with Monit. Note: this is a repost from cdaringe.net. Sharing with the community. Here is a diagram showing how both old and new connections strings can reach the same databse: Here is the script that creates a new Postgres 8.4 DB from the dump of the Postgres 9.4 database. Let’s count how many instances of '010170' there are in rand_table . Then we’ll LEFT JOIN that to the series_table . Like, I said, super contrived… Restart the windows machine for good measure. Open Chrome and navigate back to your VMware Web Client login page. You should see two notifications from chrome at the top of the page (see image below). These notifications can be disregarded (for now, see discussion further below). Using the algorithm from above, for numeric(9,0) we see atttypmod = 9 * 65,536 + 0 + 4 = 589,828. Here is how we can update the column type: Many of the problems that we solve every day are not neuroimaging-specific. Instead, they are problems that web application engineers from all sorts of industries are faced with daily. 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Python is installed in our base server image, while Node is not, and I want to keep out database servers as stock as possible. I chose python over bash because I find that bash scripts are brittle and difficult to debug. Postgres does not do anything special for multi-core environments. Instead, it relies on the operating system to destribute its child processes across the cores evenly. Our database has never been CPU bound, so we see no need to increase the number of cores at this point. I was too worried about potential side effects of using this hack and opted to not use it on a production environment. Instead, I dropped 80 views, updated about 65 column data types, and then recreated the 80 views. It required lots more work, but this way, I’m more confident in the final product. As stated before, if you do use this hack, do so at your own risk. This example leads us directly to our next topic! 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Current Value New Value OS CentOS 5.5 Ubuntu Server 14.04 DBMS PostgreSQL 8.4.5 PostgreSQL 9.4.2 RAM 16GB 48GB CPU Cores 4 4 Recovery Nightly pg_dump WAL archiving for PITR (managed by PG Barman Replication Daily pg_restore from nightly pg_dump Hot Standby w/ WAL shipping COINS DB name postgres coins Port 6117 5432 Hostname tesla.mind.unm.edu proddbcoin.mind.unm.edu Connection Pooling none pgbouncer. perform time operations only through utilities that can parse and understand the complete time strings. avoid manually extracting time components out of strings. We currently have a cron which performs a pg_dump of the production database every night, and stores the dump on our internal network storage at MRN. In the event of a total loss of our database server, we would be able to recover all changes made before midnight on the day of the failure. 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